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Agilent 6546A Q-TOF LC/MS System with 1260 Infinity II Front End

Listing #:LS-004817
Brand:Agilent
Model:6546A, G7111B, G7114A, G7116A, G7129A
Availability:In Stock
Condition:Refurbished
Warranty:90 Days
Onsite Installation:Available upon request
$129,000.00
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Agilent 6546A Q-TOF LC/MS System with 1260 Infinity II Front End — accurate-mass Q-TOF with a quaternary pump, cooled vialsampler, column thermostat, and variable wavelength detector for screening and impurity identification. Refurbished and tested by Alliant Scientific.

Description

Agilent 6546A Q-TOF LC/MS System with 1260 Infinity II Front End Overview

This Agilent 6546A Q-TOF LC/MS System with 1260 Infinity II Front End is a versatile accurate-mass system for laboratories that identify unknowns and confirm known compounds. The Q-TOF measures precursor and fragment masses with high resolution, so analysts can assign molecular formulas and distinguish compounds that a unit-mass instrument would confuse. The Dual AJS MultiMode source gives both electrospray and APCI, which broadens the range of molecules the system can ionize.

The 1260 Infinity II front end is built around a quaternary pump, which blends up to four solvents and makes method development quick. A vialsampler with a cooling unit holds up to 132 vials at a controlled temperature, so samples stay stable through long overnight sequences. The multicolumn thermostat keeps retention times consistent from run to run, and the variable wavelength detector provides a dependable single-wavelength UV trace alongside the mass spectra. Together they make a simple, rugged front end that is easy to learn and maintain.

Pharmaceutical quality control and generic drug laboratories use accurate-mass systems like this to identify impurities and degradation products and to confirm their structures. Food safety and contract testing laboratories screen produce, grain, and honey for pesticide residues and unexpected contaminants. Forensic and toxicology laboratories run broad drug and metabolite screens on blood and urine, and anti-doping laboratories rely on the same capability to find prohibited substances. Environmental and water testing laboratories apply the system to emerging contaminants such as pharmaceuticals, industrial chemicals, and pesticide transformation products in surface water and wastewater. Food authenticity groups use it to detect adulteration in olive oil, juices, and spices.

This Agilent 6546A Q-TOF LC/MS System with 1260 Infinity II Front End is offered fully refurbished and tested, in working condition, by Alliant Scientific.

Includes:

  • Agilent 6546 LC/Q-TOF Mass Spectrometer (G6546A)
    • Dual AJS MultiMode Source (ESI+APCI)
    • Data System
    • Roughing Pump
  • Agilent 1260 Infinity II Front End
    • Solvent Tray
    • G7111B Quaternary Pump
    • G7129A Vialsampler
      • G7167-60101 Cooler
    • G7116A Multicolumn Thermostat (MCT)
    • G7114A Variable Wavelength Detector (VWD)
  • 90-Day Warranty

Compare Agilent 6546 Systems

You can also browse our full LC-MS inventory for other Q-TOF and triple quadrupole systems.

Disclaimer: All brand names and trademarks are the property of their respective owners and are used for identification only. The seller is not authorized by or associated with Agilent. This product has not been reviewed, tested, or certified by Agilent to verify its quality or compatibility with Agilent’s products. Software, if included, is not transferable or upgradable.

Listing last updated: October 2026.

Technical Specifications

Manufacturer Agilent Technologies
Mass Spectrometer 6546 LC/Q-TOF (G6546A)
Mass Analyzer Quadrupole, collision cell, time-of-flight (TOF)
Ion Source Dual AJS MultiMode source (ESI + APCI)
TOF Mass Range m/z 20 to 10,000
Mass Resolution 30,000 or better across the range; above 60,000 at higher masses
Mass Accuracy Typically within 1 ppm
Acquisition Rate Up to 50 spectra per second
Software MassHunter, on the included data system
Vacuum System Roughing pump
LC System 1260 Infinity II front end
Pump (G7111B) Quaternary pump, up to 600 bar, integrated four-channel degasser
Autosampler (G7129A) Vialsampler, 132 x 2 mL vials, 0.1 to 100 µL injections
Sample Cooler (G7167-60101) Thermostatted sample cooling for the vialsampler
Column Compartment (G7116A) Multicolumn thermostat, from 10 °C below ambient to 85 °C
Detector (G7114A) Variable wavelength detector, 190 to 600 nm, standard 14 µL / 10 mm flow cell
Condition Refurbished and tested
Warranty 90 days

Additional information

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Key Features

  • Accurate-Mass Identification
    High resolution and mass accuracy typically within 1 ppm let analysts assign molecular formulas and separate compounds that share a nominal mass. This is what makes unknown screening and impurity work practical.
  • Two Ionization Modes on One Source
    The Dual AJS MultiMode source covers electrospray and APCI. That widens the range of polar and less polar compounds the system can detect without changing instruments.
  • Four-Solvent Quaternary Pump
    The pump blends up to four solvents on the fly. Analysts can screen mobile phases and adjust gradients without remixing bottles, which shortens method development.
  • Cooled Vialsampler for Overnight Runs
    The sampler holds up to 132 vials and keeps them at a controlled temperature. Sensitive samples stay stable through long unattended sequences.
  • Stable Column Temperature
    The multicolumn thermostat operates from 10 °C below ambient to 85 °C. Steady temperature keeps retention times consistent from batch to batch.
  • UV Detection Next to the Mass Spectra
    The variable wavelength detector adds a single-wavelength UV trace. It is a simple way to confirm quantitation and spot peaks before reviewing the MS data.
  • One Workstation Controls Everything
    MassHunter software on the included data system runs the LC and mass spectrometer together.

Applications

  • Pharmaceutical Impurity and Degradant Identification
    Generic drug manufacturers and quality control laboratories identify unknown peaks in stability samples and confirm structures from accurate fragment masses.
  • Pesticide Residue Screening in Food
    Food safety and contract testing laboratories screen produce, grain, and honey for hundreds of residues in a single run.
  • Forensic and Clinical Toxicology
    Toxicology laboratories run broad drug and metabolite screens on blood and urine, including compounds outside a targeted panel.
  • Anti-Doping Analysis
    Sports testing laboratories detect prohibited substances and their metabolites in athlete samples.
  • Environmental Water Testing
    Water utilities and environmental laboratories look for pharmaceuticals, industrial chemicals, and pesticide transformation products in surface water and wastewater.
  • Food Authenticity and Adulteration
    Laboratories check olive oil, fruit juices, and spices for marker compounds that reveal dilution or substitution.
  • Flavor, Fragrance, and Chemical Manufacturing
    Producers confirm raw material identity and investigate off-spec batches.

FAQ (Frequently Asked Questions)

Who typically uses an Agilent 6546A Q-TOF LC/MS system?

Pharmaceutical QC and generic drug laboratories, food safety and contract testing laboratories, forensic and toxicology laboratories, anti-doping laboratories, and environmental and water testing laboratories. The common need is identifying compounds that are not on a targeted list.

What does the VWD add to the mass spectrometer?

It gives a single-wavelength UV trace that runs alongside the accurate-mass data. Analysts use it to confirm quantitation, check peak purity at a chosen wavelength, and keep a familiar UV record for methods that already rely on it.

How many samples can the vialsampler hold?

Up to 132 vials of 2 mL. The cooling unit keeps samples at a controlled temperature during long overnight runs.

Which ionization modes does the source support?

Both electrospray (ESI) and APCI through the Dual AJS MultiMode source. That lets one system handle polar compounds and less polar compounds.

What accuracy and resolution can I expect?

Mass accuracy is typically within 1 ppm. Resolution is 30,000 or better across the mass range and above 60,000 at higher masses, and it holds as the acquisition rate increases.

Which software controls the system?

Agilent MassHunter on the included data system controls both the LC and the mass spectrometer.

Does this system include a warranty?

Yes — it ships with a 90-day warranty.